Exercises for “Evolutionary Genomics and Bioinformatics” course.
Last updated: October 26, 2020

R Tutorials and Exercises

Lab 1: Intro to R & Markdown || Exercises

Lab 2: Intro to Github & adding references to Markdown || Exercises

Lab 3: Data Wrangling in R || Exercises B

Lab 4: Working with COVID data in R - Part 1 || Exercises, Visualization tutorial (4A)

Lab 5: Working with COVID data in R - Part 2 || Exercises, Visualization tutorial (5A)

Lab 5 extra: Interactive Graphs and Animations | Exercises

Lab 6: Data Maps and Interactive Graphs from the COVID-19 reporting data || Exercises

Lab 6 extra: Shiny Apps

Lab 7: RNA-Seq Workflow: gene-level exploratory analysis and differential expression || Exercises

Lab 8: Sequence Alignment, Phylogenetic Analysis and Tree Visualization || Exercises

Python Tutorials and Exercises

Data Carpentry Instructions

Starting with Data || Exercises

Indexing, Slicing and Subsetting || Exercises

Data Types and Formats || Exercises

Combining DataFrames with Pandas || Exercises

Data Workflows and Automation || Exercises